PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241585.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 312aa    MW: 35683.5 Da    PI: 9.3612
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241585.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.1e-141096197
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffk+l   + +++ +l +p  f  ++ g+++++s    l  +   +W+v++  +k  ++++++kGWkeFv+++gLk  +f++F++ g+s+f   v v
  XP_008241585.1 10 FFKAL--VHDFSN-QLKIPPAFYVHFaGEVPRRS----LLRTPAGTWNVNV--EKVNDGFFFQKGWKEFVHDHGLKLCEFLIFRYAGHSKF--DVDV 95
                    67777..556665.5********88876666654....55566679*****..99999****************************99999..5544 PP

                    E CS
              B3 97 f 97
                    +
  XP_008241585.1 96 Y 96
                    4 PP

2B366.24.9e-21218309198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ff + +++ + ++grlv+pk+f +++ gkk   k ++l+d s r+W vk+i +++s+r  l++GW +Fv++  Lk+gD++vF+l++r+++ ++v+
  XP_008241585.1 218 FFRAIMHKAYVNKGRLVIPKSFHNSCIGKK---KYVRLQD-SKRRWLVKCISKRNSSR--LSAGWYQFVRDRALKVGDVCVFELIDRNDAVMKVS 306
                     677778888889999********9995553...4699999.899******88888777..9**************************9*99**** PP

                     EE- CS
              B3  96 vfr 98 
                     +fr
  XP_008241585.1 307 IFR 309
                     998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-194101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-196101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.35799IPR003340B3 DNA binding domain
CDDcd100171.58E-14896No hitNo description
PfamPF023621.5E-121093IPR003340B3 DNA binding domain
SMARTSM010198.5E-111099IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-23211309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-20213309IPR015300DNA-binding pseudobarrel domain
CDDcd100175.98E-19217309No hitNo description
PROSITE profilePS5086313.761218311IPR003340B3 DNA binding domain
PfamPF023629.5E-19218309IPR003340B3 DNA binding domain
SMARTSM010194.0E-14219311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MARRRRKPSF FKALVHDFSN QLKIPPAFYV HFAGEVPRRS LLRTPAGTWN VNVEKVNDGF  60
FFQKGWKEFV HDHGLKLCEF LIFRYAGHSK FDVDVYGRNG CKKEFVMAVS KNDRSLEEGH  120
DNAIHGTQNV DGQGFGSADG TTTSQAICAI KNEVIDVESD TSMDIDEPDT QEDQLNEDSE  180
IGLPRELGST EHFYSRAQME NPSEALEAAK KFSSKHPFFR AIMHKAYVNK GRLVIPKSFH  240
NSCIGKKKYV RLQDSKRRWL VKCISKRNSS RLSAGWYQFV RDRALKVGDV CVFELIDRND  300
AVMKVSIFRC NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-2020031130143B3 domain-containing transcription factor VRN
4i1k_B1e-2020031130143B3 domain-containing transcription factor VRN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241585.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLM5W9U80.0M5W9U8_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16060710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-33B3 family protein